PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02139.50
Common NameJCGZ_13051, LOC105638778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 308aa    MW: 34341.4 Da    PI: 7.8364
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02139.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.24e-16242267126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tG C+yGd+C+FaHg
  Jcr4S02139.50 242 WKTELCNKWQETGACPYGDNCQFAHG 267
                    8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.22E-11238273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-19238274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145241269IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-9241268IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-13242267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-7275305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5276306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.07279307IPR000571Zinc finger, CCCH-type
SMARTSM003560.99279306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKRASPPLD QITVSPASKS PPLPSSPPSD NRTQQFASTF TTLYHSIFPP KPSPLPSSLS  60
FSITPSTSSP SSAATTDDFD IEHQLHQARL ILEYQELCDH YELSLDRLQA LTTEIESLRQ  120
ENTNLRLANN DLVKLLSLSS QAAIQSRFNS REMVEPSRFE RRNGERVTLP KSISVRSSGY  180
LKLNRADNAS NGDQSSTSTR SRVASHHDQF VSGLVQQRVC VPGGGKGDNP AVELEVFNQG  240
MWKTELCNKW QETGACPYGD NCQFAHGIKE LRPVIRHPRY KTQVCRMVVA GQACPYGHRE  300
VFLHSDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-19242305467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078032.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N32e-80C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067KL690.0A0A067KL69_JATCU; Uncharacterized protein
STRINGPOPTR_0005s15100.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-76C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]